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  • Top cofit genes for PP_3473 from Pseudomonas putida KT2440

    curli secretion and assembly outer membrane associated component
    SEED: Curli production assembly/transport component CsgF
    KEGG: curli production assembly/transport component CsgF

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3474 putative Curli fiber protein CsgE 0.46 0.32
    2 PP_1385 Probable efflux pump membrane transporter TtgB 0.24 0.27
    3 PP_1386 Probable efflux pump periplasmic linker TtgA no 0.26
    4 PP_1232 conserved exported protein of unknown function no 0.25
    5 PP_1384 Probable efflux pump outer membrane protein TtgC 0.24 0.25
    6 PP_4937 toluene tolerance protein no 0.25
    7 PP_1941 conserved protein of unknown function no 0.22
    8 PP_0961 toluene tolerance protein no 0.22
    9 PP_0960 phospholipid ABC transporter binding protein no 0.21
    10 PP_3925 conserved protein of unknown function 0.83 0.20
    11 PP_2163 VacJ lipoprotein no 0.20
    12 PP_3300 Transcriptional regulator, tetR family no 0.20
    13 PP_0368 putative Acyl-CoA dehydrogenase no 0.20
    14 PP_2322 Major outer membrane lipoprotein no 0.19
    15 PP_1187 sensor protein no 0.19
    16 PP_0345 putative Heptose kinase WapP no 0.19
    17 PP_0958 phospholipid ABC transporter ATP-binding subunit no 0.18
    18 PP_2019 adhesin-associated MmpL efflux pump (from data) 0.42 0.18
    19 PP_0346 putative Heptose kinase WapQ no 0.18
    20 PP_0962 toluene-tolerance protein no 0.18

    Or look for negative cofitness