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  • Top cofit genes for PP_3467 from Pseudomonas putida KT2440

    Sigma-54 dependent transcriptional regulator
    SEED: sigma-54 dependent transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_5602 quinohaemoprotein amine dehydrogenase, alpha subunit no 0.34
    2 PP_3459 quinohemoprotein amine dehydrogenase, beta subunit no 0.28
    3 PP_3458 Butyrate--CoA ligase 0.37 0.27
    4 PP_3461 quinohemoprotein amine dehydrogenase modification protein no 0.24
    5 PP_2667 ABC transporter no 0.17
    6 PP_5538 putative ABC transporter, substrate-binding protein 0.27 0.17
    7 PP_1861 Transcriptional regulator, LysR family no 0.17
    8 PP_2679 quinoprotein ethanol dehydrogenase 0.60 0.17
    9 PP_1880 Outer membrane autotransporter 0.34 0.16
    10 PP_1410 conserved protein of unknown function no 0.15
    11 PP_1893 medium-long chain acyl-CoA dehydrogenase 0.76 0.15
    12 PP_5713 conserved protein of unknown function no 0.15
    13 PP_2412 ParA family protein no 0.15
    14 PP_2669 putative Outer membrane protein 0.24 0.15
    15 PP_0053 putative sulfide:quinone oxidoreductase 0.41 0.14
    16 PP_0653 conserved protein of unknown function no 0.14
    17 PP_3608 Transcriptional regulator, LysR family no 0.14
    18 PP_2676 putative Periplasmic binding protein no 0.14
    19 PP_3052 conserved protein of unknown function no 0.13
    20 PP_1056 putative Iron-chelator utilization protein no 0.13

    Or look for negative cofitness