Top cofit genes for PP_3454 from Pseudomonas putida KT2440

putative transcriptional regulatory protein
SEED: Transcriptional regulatory protein RstA
KEGG: two-component system, OmpR family, response regulator

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_1385		Probable efflux pump membrane transporter TtgB	0.61	0.35
2	PP_1386		Probable efflux pump periplasmic linker TtgA	0.56	0.34
3	PP_3453		putative Sensor protein RstB	0.77	0.26
4	PP_1384		Probable efflux pump outer membrane protein TtgC	0.68	0.26
5	PP_3474		putative Curli fiber protein CsgE	no	0.21
6	PP_5294		Ribonuclease PH	no	0.20
7	PP_0119		putative zinc uptake regulation protein ZUR	no	0.19
8	PP_5328		putative phosphate transport system permease protein	0.25	0.19
9	PP_5327		putative phosphate ABC transporter, permease subunit	0.75	0.18
10	PP_2697		putative oxidoreductase containing a flavin reductase domain	no	0.17
11	PP_4546		ATP-dependent helicase HrpA	0.30	0.17
12	PP_2160		NADPH-dependent 7-cyano-7-deazaguanine reductase	0.54	0.17
13	PP_0555		Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha	no	0.17
14	PP_5329		putative phosphate ABC transporter, periplasmic phosphate-binding protein	0.31	0.16
15	PP_4916		putative esterase	0.51	0.16
16	PP_3649		Transcriptional regulator, GntR family	no	0.16
17	PP_1351		putative 2-dehydropantoate 2-reductase	no	0.16
18	PP_3522		conserved protein of unknown function	no	0.16
19	PP_4004		DNA translocase FtsK	no	0.16
20	PP_0887		Sensor histidine kinase	no	0.15

Or look for negative cofitness