Top cofit genes for PP_3419 from Pseudomonas putida KT2440

Sigma-54 dependent transcriptional regulator/response regulator
SEED: Nitrogen regulation protein NR(I)

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_3417		D-gluconate transporter	no	0.33
2	PP_5639		conserved exported protein of unknown function	no	0.32
3	PP_0570		lipoprotein of unknown function	no	0.29
4	PP_1011		glucokinase	no	0.28
5	PP_1304		sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase	no	0.27
6	PP_1303		Sulfate adenylyltransferase subunit 2	no	0.26
7	PP_0049		conserved protein of unknown function	no	0.25
8	PP_1013		Sensor histidine kinase	no	0.25
9	PP_4246		Periplasmic binding protein	no	0.25
10	PP_2187		Universal stress protein family	no	0.25
11	PP_5303		aminoacrylate/iminopropionate hydrolase/deaminase	0.98	0.24
12	PP_4977		5,10-methylenetetrahydrofolate reductase	no	0.24
13	PP_1656		ATP:GTP 3'-pyrophosphotransferase	no	0.24
14	PP_0082		tryptophan synthase alpha chain	no	0.24
15	PP_0292		1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data)	no	0.24
16	PP_1025		2-isopropylmalate synthase	no	0.24
17	PP_1015		mannose/glucose ABC transporter, glucose-binding periplasmic protein	no	0.24
18	PP_5098		methionine biosynthesis protein MetW	no	0.24
19	PP_2375		cobalamin-dependent methionine synthase	no	0.24
20	PP_3691		DNA helicase-related protein	no	0.24

Or look for negative cofitness