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  • Top cofit genes for PP_3399 from Pseudomonas putida KT2440

    minor curlin subunit CsgB, nucleation component of curlin monomers
    SEED: Minor curlin subunit CsgB, nucleation component of curlin monomers

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4999 dihydroorotase-like protein no 0.28
    2 PP_0691 Glutamate 5-kinase no 0.28
    3 PP_4100 Transcriptional regulator, Cro/CI family no 0.25
    4 PP_4724 Carbamoyl-phosphate synthase small chain no 0.24
    5 PP_4723 Carbamoyl-phosphate synthase large chain no 0.23
    6 PP_2000 amidophosphoribosyl transferase no 0.23
    7 PP_3423 Type II secretion pathway protein XcpT no 0.23
    8 PP_1824 Smr domain protein no 0.22
    9 PP_2870 putative spermidine/putrescine-binding periplasmic protein no 0.22
    10 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex no 0.21
    11 PP_4799 putative Muramoyltetrapeptide carboxypeptidase no 0.21
    12 PP_3248 Dyp-type peroxidase family protein no 0.21
    13 PP_0765 putative adhesin (DUF1302) (from data) no 0.20
    14 PP_2025 Exonuclease SbcD no 0.20
    15 PP_4710 tRNA pseudouridine 55 synthase no 0.20
    16 PP_5399 conserved protein of unknown function no 0.19
    17 PP_0674 ADP/ATP ratio sensor and inhibitor of translation no 0.19
    18 PP_1124 conserved membrane protein of unknown function no 0.19
    19 PP_3421 Sensor histidine kinase no 0.19
    20 PP_0632 leader peptidase/N-methyltransferase no 0.19

    Or look for negative cofitness