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  • Top cofit genes for PP_3393 from Pseudomonas putida KT2440

    CAIB/BAIF family protein
    SEED: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4942 conserved protein of unknown function no 0.25
    2 PP_4880 exoribonuclease R 0.20 0.23
    3 PP_0123 DNA polymerase I, 5 no 0.23
    4 PP_5310 junction-specific ATP-dependent DNA helicase 0.22 0.23
    5 PP_1734 Probable septum site-determining protein MinC no 0.23
    6 PP_2144 Transcriptional regulator, TetR family no 0.22
    7 PP_4261 cation-transporting P-type ATPase no 0.22
    8 PP_1623 RNA polymerase, sigma S (sigma 38) factor no 0.22
    9 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase no 0.22
    10 PP_4892 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex 0.22 0.22
    11 PP_5337 LysR family transcriptional regulator no 0.21
    12 PP_2077 diaminopimelate decarboxylase no 0.21
    13 PP_5230 Tyrosine recombinase XerC 0.24 0.21
    14 PP_0984 conserved membrane protein of unknown function no 0.21
    15 PP_1028 Transcriptional regulator, LysR family no 0.21
    16 PP_4375 flagellar chaperone, inhibits premature FliC assembly no 0.21
    17 PP_0504 Outer membrane protein OprG no 0.20
    18 PP_4129 NADH:ubiquinone oxidoreductase, membrane subunit L no 0.20
    19 PP_2319 conserved protein of unknown function no 0.20
    20 PP_1319 Ubiquinol--cytochrome c reductase, cytochrome c1 no 0.20

    Or look for negative cofitness