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Cofit
Protein
Homologs
Top cofit genes for PP_3390 from
Pseudomonas putida KT2440
putative Porin
SEED: Tricarboxylate porin OpdH
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PP
_1445
carbohydrate-selective porin
no
0.19
2
PP
_2240
putative ABC efflux transporter, permease/ATP-binding protein
no
0.19
3
PP
_3847
Transcriptional regulator, LuxR family
no
0.18
4
PP
_t29
tRNA-Ala
no
0.18
5
PP
_1907
Hydrolase, haloacid dehalogenase-like family
no
0.18
6
PP
_5537
conserved membrane protein of unknown function
no
0.18
7
PP
_2210
LysR family transcriptional regulator
no
0.17
8
PP
_4542
putative ABC transporter, ATP-binding protein/permease protein
no
0.17
9
PP
_3575
Outer membrane ferric siderophore receptor
no
0.17
10
PP
_4611
RNA polymerase sigma-70 factor, ECF subfamily
no
0.17
11
PP
_4559
peptide deformylase
no
0.17
12
PP
_4100
Transcriptional regulator, Cro/CI family
no
0.16
13
PP
_3423
Type II secretion pathway protein XcpT
no
0.16
14
PP
_0574
DNA-binding response regulator, LuxR family
no
0.16
15
PP
_5522
protein of unknown function
no
0.16
16
PP
_3692
conserved protein of unknown function
no
0.16
17
PP
_3463
phenylacetaldehyde dehydrogenase
no
0.16
18
PP
_4988
signal transduction histidine kinase CheA/CheY-like receiver
no
0.16
19
PP
_3920
putative Phage integrase
no
0.16
20
PP
_5686
protein of unknown function
no
0.16
Or look for
negative cofitness