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  • Top cofit genes for PP_3380 from Pseudomonas putida KT2440

    2-ketogluconate utilization repressor
    SEED: 2-ketogluconate utilization repressor PtxS
    KEGG: LacI family transcriptional regulator, kdg operon repressor

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3377 2-ketogluconate transporter, putative 0.59 0.58
    2 PP_3376 putative phosphonate dehydrogenase 0.65 0.25
    3 PP_3378 putative 2-ketogluconokinase 0.64 0.18
    4 PP_5233 ammonium transporter AmtB 0.50 0.17
    5 PP_5181 spermidine/putrescine ABC transporter - periplasmic subunit 0.31 0.14
    6 PP_5090 putative cell division protein no 0.14
    7 PP_1228 Methyl-accepting chemotaxis transducer no 0.14
    8 PP_5180 spermidine/putrescine ABC transporter - periplasmic subunit 0.55 0.14
    9 PP_0146 putative transport protein no 0.14
    10 PP_5183 glutamylpolyamine synthetase 0.74 0.14
    11 PP_4615 conserved membrane protein of unknown function 0.26 0.14
    12 PP_1196 conserved exported protein of unknown function no 0.14
    13 PP_4765 conserved protein of unknown function no 0.14
    14 PP_2245 Transcriptional regulator, Cro/CI family no 0.13
    15 PP_3072 Ecotin no 0.13
    16 PP_0883 glycine-glutamate dipeptide porin no 0.13
    17 PP_4118 putative Membrane protein no 0.13
    18 PP_3105 conserved membrane protein of unknown function no 0.13
    19 PP_3546 Sensory box histidine kinase/response regulator no 0.13
    20 PP_2689 putative Endoribonuclease no 0.13

    Or look for negative cofitness