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  • Top cofit genes for PP_3376 from Pseudomonas putida KT2440

    putative phosphonate dehydrogenase
    SEED: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43)
    KEGG: phosphogluconate 2-dehydrogenase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3790 diaminopimelate epimerase no 0.55
    2 PP_2714 Sensor histidine kinase no 0.53
    3 PP_3786 aminotransferase no 0.50
    4 PP_1063 DNA-binding transcriptional regulator, homocysteine-binding no 0.50
    5 PP_2348 Sensor histidine kinase 0.31 0.49
    6 PP_3788 putative Non-ribosomal peptide synthetase no 0.49
    7 PP_3787 conserved protein of unknown function no 0.45
    8 PP_1109 Transcriptional regulator, GntR family no 0.45
    9 PP_0506 putative ABC efflux transporter, permease protein no 0.45
    10 PP_4684 conserved protein of unknown function with kinase-like domain no 0.44
    11 PP_1348 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase no 0.44
    12 PP_1110 serine acetyltransferase no 0.43
    13 PP_1111 putative Synthetase no 0.42
    14 PP_3776 putative permease (RarD protein) no 0.41
    15 PP_4922 Phosphomethylpyrimidine synthase 0.34 0.39
    16 PP_1009 glyceraldehyde-3-phosphate dehydrogenase 0.90 0.39
    17 PP_3377 2-ketogluconate transporter, putative 0.83 0.39
    18 PP_3443 putative glyceraldehyde-3-phosphate dehydrogenase 0.62 0.38
    19 PP_2388 Transporter, LysE family no 0.36
    20 PP_5076 L-glutamate synthase(NADPH) alpha subunit 0.90 0.34

    Or look for negative cofitness