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  • Top cofit genes for PP_3369 from Pseudomonas putida KT2440

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1063 DNA-binding transcriptional regulator, homocysteine-binding no 0.23
    2 PP_0506 putative ABC efflux transporter, permease protein no 0.22
    3 PP_4897 N-acetylmuramoyl-L-alanine amidase no 0.20
    4 PP_0662 putative Threonine synthase no 0.19
    5 PP_1782 dTDP-4-dehydrorhamnose 3,5-epimerase 0.48 0.19
    6 PP_3790 diaminopimelate epimerase no 0.19
    7 PP_3788 putative Non-ribosomal peptide synthetase no 0.18
    8 PP_4421 putative aminotransferase no 0.18
    9 PP_4702 acetyl-CoA synthetase no 0.18
    10 PP_1253 Transcriptional regulator, ArsR family no 0.18
    11 PP_2645 magnesium transporter, ATP-dependent no 0.18
    12 PP_2714 Sensor histidine kinase no 0.18
    13 PP_3328 putative Ring-cleaving dioxygenase no 0.17
    14 PP_5648 conserved exported protein of unknown function no 0.17
    15 PP_4886 conserved protein of unknown function no 0.17
    16 PP_2051 3-ketoacyl-CoA thiolase (thiolase I) no 0.17
    17 PP_2248 putative transporter no 0.17
    18 PP_2983 conserved protein of unknown function no 0.17
    19 PP_3677 conserved protein of unknown function no 0.17
    20 PP_1644 NAD(P)H dehydrogenase (quinone) no 0.16

    Or look for negative cofitness