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  • Top cofit genes for PP_3359 from Pseudomonas putida KT2440

    putative Hydroxycinnamic acid degradation regulator
    SEED: Transcriptional regulator, MarR family

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0787 quinolinate phosphoribosyltransferase (decarboxylating) monomer no 0.24
    2 PP_3073 3-hydroxybutyrate dehydrogenase no 0.24
    3 PP_3439 Transcriptional regulator, AraC family no 0.24
    4 PP_1302 putative metal-binding hydrolase-oxidase enzyme no 0.24
    5 PP_5104 thiazole synthase 0.35 0.23
    6 PP_0804 Protein secretion ABC efflux system, permease and ATP-binding protein no 0.23
    7 PP_2439 peroxiredoxin, alkylhydroperoxide reductase - small subunit no 0.23
    8 PP_0489 formate dehydrogenase-O major subunit no 0.23
    9 PP_4723 Carbamoyl-phosphate synthase large chain no 0.23
    10 PP_1231 quinolinate synthase [4Fe-4S] cluster subunit 0.38 0.23
    11 PP_4724 Carbamoyl-phosphate synthase small chain no 0.23
    12 PP_2327 transcriptional dual regulator / CysB-O-acetyl-L-serine no 0.22
    13 PP_4922 Phosphomethylpyrimidine synthase 0.35 0.22
    14 PP_4700 pantothenate synthetase 0.38 0.22
    15 PP_4782 Phosphomethylpyrimidine kinase 0.31 0.22
    16 PP_0164 conserved protein of unknown function 0.23 0.22
    17 PP_1233 sulfurtransferase 0.37 0.22
    18 PP_2935 conserved membrane protein of unknown function no 0.21
    19 PP_2971 transposase no 0.21
    20 PP_4162 conserved membrane protein of unknown function no 0.21

    Or look for negative cofitness