Top cofit genes for PP_3356 from Pseudomonas putida KT2440

p-coumarate CoA-ligase (EC 6.2.1.12) (from data)
Original annotation: feruloyl-CoA-synthetase
KEGG: feruloyl-CoA synthase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_3358		hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data)	0.96	0.88
2	PP_3357		p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data)	0.94	0.82
3	PP_3537		p-hydroxybenzoate hydroxylase	0.81	0.55
4	PP_1379		3-carboxy-cis,cis-muconate cycloisomerase	0.86	0.52
5	PP_4655		protocatechuate 3,4-dioxygenase alpha chain	0.81	0.51
6	PP_3538		transcriptional regulator	0.82	0.50
7	PP_3951		3-oxoadipate CoA-transferase subunit A	0.39	0.50
8	PP_1377		beta-ketoadipyl-CoA thiolase	0.85	0.49
9	PP_4656		protocatechuate 3,4-dioxygenase beta chain	0.85	0.48
10	PP_1375		transcription regulatory protein (pca regulon)	0.79	0.47
11	PP_3952		3-oxoadipate CoA-transferase subunit A	0.32	0.47
12	PP_1378		alpha-ketoglutarate permease	0.75	0.46
13	PP_1380		3-oxoadipate enol-lactonase 2	0.86	0.46
14	PP_1713		Transcriptional regulator PcaQ	0.42	0.39
15	PP_1381		4-carboxymuconolactone decarboxylase	0.85	0.39
16	PP_3736		vanillate O-demethylase oxygenase subunit	0.53	0.36
17	PP_3737		vanillate O-demethylase oxidoreductase	0.60	0.35
18	PP_2354		Sensory box histidine kinase/response regulator	no	0.33
19	PP_2356		putative Phytochrome family protein	no	0.32
20	PP_3590		aromatic-amino-acid transaminase (EC 2.6.1.57) (from data)	0.35	0.28

Or look for negative cofitness