Top cofit genes for PP_3348 from Pseudomonas putida KT2440

GGDEF domain protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_4246		Periplasmic binding protein	0.23	0.21
2	PP_2173		Transcriptional regulator, AraC family	no	0.20
3	PP_2073		Acetyltransferase, GNAT family	no	0.18
4	PP_2591		Ferric anguibactin-binding protein	no	0.18
5	PP_2347		DNA-binding response regulator	no	0.18
6	PP_4272		conserved membrane protein of unknown function	no	0.17
7	PP_4405		Sensory box protein	no	0.17
8	PP_2592		Ferric siderophore ABC transporter, ATP-binding protein	no	0.17
9	PP_2640		Acetyltransferase, GNAT family	no	0.17
10	PP_1570		Head-tail adaptor	no	0.17
11	PP_1275		conserved protein of unknown function	0.23	0.16
12	PP_3954		periplasmic binding subunit of unknown solute	no	0.16
13	PP_4882		Iron ABC transporter, permease protein	no	0.16
14	PP_1760		ABC transporter, ATP-binding protein	0.21	0.16
15	PP_0223		Monooxygenase, DszC family	no	0.16
16	PP_2599		Chemotaxis sensory transducer family protein	no	0.16
17	PP_2355		Response regulator receiver protein	no	0.15
18	PP_1045		Type II secretion pathway protein XcpP	no	0.15
19	PP_4585		RNA methyltransferase, TrmH family	no	0.15
20	PP_2198		aldose sugar dehydrogenase	no	0.15

Or look for negative cofitness