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  • Top cofit genes for PP_3341 from Pseudomonas putida KT2440

    nickel-responsive regulator
    SEED: Nickel responsive regulator NikR
    KEGG: CopG family transcriptional regulator, nickel-responsive regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0506 putative ABC efflux transporter, permease protein no 0.21
    2 PP_5619 protein of unknown function no 0.20
    3 PP_2609 Transcriptional regulator, IclR family no 0.19
    4 PP_3064 Phage tail protein no 0.19
    5 PP_5251 putative Transporter no 0.18
    6 PP_4870 Azurin no 0.18
    7 PP_0172 ABC transporter, permease protein no 0.18
    8 PP_3740 Major facilitator family transporter no 0.18
    9 PP_4242 conserved protein of unknown function with Rhs repeat-associated core domain no 0.17
    10 PP_3183 SCO1/SenC family protein/cytochrome c no 0.17
    11 PP_5370 Oxidoreductase-related protein no 0.17
    12 PP_2770 conserved exported protein of unknown function no 0.17
    13 PP_0662 putative Threonine synthase no 0.17
    14 PP_0572 peptidoglycan glycosyltransferase no 0.16
    15 PP_1369 conserved protein of unknown function no 0.16
    16 PP_2447 conserved exported protein of unknown function no 0.16
    17 PP_3186 putative Transcriptional activator no 0.16
    18 PP_5320 two-component system DNA-binding transcriptional dual response regulator PhoB no 0.16
    19 PP_4462 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase no 0.16
    20 PP_0570 lipoprotein of unknown function 0.37 0.16

    Or look for negative cofitness