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  • Top cofit genes for PP_3286 from Pseudomonas putida KT2440

    DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA)
    SEED: Phenylacetic acid degradation operon negative regulatory protein PaaX
    KEGG: phenylacetic acid degradation operon negative regulatory protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3753 Transcriptional regulator, AraC family no 0.40
    2 PP_3754 Beta-ketothiolase BktB no 0.40
    3 PP_2790 Sigma-54 dependent sensory box protein no 0.39
    4 PP_2791 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) no 0.36
    5 PP_1025 2-isopropylmalate synthase 0.45 0.34
    6 PP_2333 GntR family transcriptional regulator no 0.34
    7 PP_4993 Glutathione synthetase 0.56 0.33
    8 PP_2335 methylcitrate synthase no 0.31
    9 PP_2334 2-methylisocitrate lyase no 0.30
    10 PP_3755 3-hydroxybutyryl-CoA dehydrogenase no 0.29
    11 PP_1988 3-isopropylmalate dehydrogenase no 0.29
    12 PP_2793 Acyl-CoA dehydrogenase family protein no 0.29
    13 PP_1985 3-isopropylmalate dehydratase large subunit no 0.29
    14 PP_2794 Oxidoreductase, short chain dehydrogenase/reductase family no 0.29
    15 PP_2324 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase 0.36 0.28
    16 PP_1986 3-isopropylmalate dehydratase small subunit 0.43 0.28
    17 PP_2336 aconitate hydratase 1 no 0.27
    18 PP_2328 Phosphoadenosine phosphosulfate reductase 0.51 0.27
    19 PP_4700 pantothenate synthetase no 0.27
    20 PP_1304 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase 0.48 0.27

    Or look for negative cofitness