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  • Top cofit genes for PP_3285 from Pseudomonas putida KT2440

    detoxifying thioesterase of the phenylacetate degradation pathway
    SEED: Phenylacetic acid degradation protein PaaY
    KEGG: carnitine operon protein CaiE

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3272 acetate permease no 0.69
    2 PP_3282 3-hydroxyadipyl-CoA dehydrogenase 0.58 0.66
    3 PP_3270 oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase 0.68 0.66
    4 PP_3279 phenylacetate-CoA ligase 0.66 0.63
    5 PP_3283 1,2-epoxyphenylacetyl-CoA isomerase 0.62 0.59
    6 PP_3274 ring 1,2-phenylacetyl-CoA epoxidase, reductase subunit 0.31 0.58
    7 PP_3276 ring 1,2-phenylacetyl-CoA epoxidase beta subunit no 0.55
    8 PP_3278 ring 1,2-phenylacetyl-CoA epoxidase alpha subunit 0.50 0.53
    9 PP_3284 enoyl-CoA hydratase-isomerase 0.65 0.50
    10 PP_3280 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase 0.48 0.50
    11 PP_3277 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit 0.35 0.48
    12 PP_3273 conserved protein of unknown function no 0.47
    13 PP_3271 phenylacetic acid-specific porin no 0.45
    14 PP_3494 conserved exported protein of unknown function no 0.38
    15 PP_3493 Transcriptional regulator, LysR family no 0.35
    16 PP_3281 hydroxyphenylacetyl-CoA thioesterase 0.41 0.35
    17 PP_0179 putative efflux transporter no 0.23
    18 PP_0176 putative efflux transporter no 0.20
    19 PP_0178 putative efflux pump no 0.16
    20 PP_3662 conserved protein of unknown function no 0.14

    Or look for negative cofitness