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  • Top cofit genes for PP_3282 from Pseudomonas putida KT2440

    3-hydroxyadipyl-CoA dehydrogenase
    SEED: 3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-)
    KEGG: 3-hydroxybutyryl-CoA dehydrogenase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3270 oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase 0.78 0.82
    2 PP_3272 acetate permease no 0.82
    3 PP_3279 phenylacetate-CoA ligase 0.82 0.80
    4 PP_3274 ring 1,2-phenylacetyl-CoA epoxidase, reductase subunit 0.62 0.74
    5 PP_3283 1,2-epoxyphenylacetyl-CoA isomerase 0.78 0.71
    6 PP_3285 detoxifying thioesterase of the phenylacetate degradation pathway 0.58 0.66
    7 PP_3276 ring 1,2-phenylacetyl-CoA epoxidase beta subunit 0.59 0.64
    8 PP_3278 ring 1,2-phenylacetyl-CoA epoxidase alpha subunit 0.58 0.64
    9 PP_3284 enoyl-CoA hydratase-isomerase 0.78 0.63
    10 PP_3273 conserved protein of unknown function no 0.60
    11 PP_3277 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit 0.55 0.59
    12 PP_3271 phenylacetic acid-specific porin 0.30 0.56
    13 PP_3280 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase 0.78 0.54
    14 PP_3281 hydroxyphenylacetyl-CoA thioesterase 0.58 0.49
    15 PP_3494 conserved exported protein of unknown function no 0.49
    16 PP_3493 Transcriptional regulator, LysR family no 0.47
    17 PP_0179 putative efflux transporter no 0.25
    18 PP_0176 putative efflux transporter no 0.20
    19 PP_0178 putative efflux pump no 0.20
    20 PP_2356 putative Phytochrome family protein 0.46 0.16

    Or look for negative cofitness