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  • Top cofit genes for PP_3271 from Pseudomonas putida KT2440

    phenylacetic acid-specific porin
    SEED: Phenylacetic acid-specific porin PaaM

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3279 phenylacetate-CoA ligase no 0.56
    2 PP_3282 3-hydroxyadipyl-CoA dehydrogenase no 0.56
    3 PP_3270 oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase no 0.53
    4 PP_3272 acetate permease no 0.53
    5 PP_3274 ring 1,2-phenylacetyl-CoA epoxidase, reductase subunit no 0.51
    6 PP_3283 1,2-epoxyphenylacetyl-CoA isomerase no 0.50
    7 PP_3276 ring 1,2-phenylacetyl-CoA epoxidase beta subunit no 0.46
    8 PP_3285 detoxifying thioesterase of the phenylacetate degradation pathway no 0.45
    9 PP_3278 ring 1,2-phenylacetyl-CoA epoxidase alpha subunit no 0.43
    10 PP_3277 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit no 0.43
    11 PP_3273 conserved protein of unknown function no 0.42
    12 PP_3284 enoyl-CoA hydratase-isomerase no 0.41
    13 PP_3493 Transcriptional regulator, LysR family no 0.36
    14 PP_3281 hydroxyphenylacetyl-CoA thioesterase no 0.30
    15 PP_3494 conserved exported protein of unknown function no 0.29
    16 PP_3280 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase 0.35 0.27
    17 PP_3719 Putrescine-binding periplasmic protein no 0.20
    18 PP_2638 putative Cellulose synthase operon C protein no 0.19
    19 PP_2043 conserved exported protein of unknown function no 0.18
    20 PP_4041 putative glycoside hydrolase no 0.18

    Or look for negative cofitness