Top cofit genes for PP_3260 from Pseudomonas putida KT2440

DNA ligase D
SEED: ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD
KEGG: DNA ligase (ATP)

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_2043		conserved exported protein of unknown function	no	0.29
2	PP_1879		conserved protein of unknown function	no	0.28
3	PP_0138		conserved membrane protein of unknown function	0.61	0.26
4	PP_2410		cation efflux system protein	no	0.26
5	PP_2009		putative 1-aminocyclopropane-1-carboxylate deaminase	no	0.24
6	PP_2025		Exonuclease SbcD	no	0.24
7	PP_0207		putative Nitrate ABC transporter, periplasmic nitrate-binding protein	no	0.23
8	PP_3635		putative Sulfonate ABC transporter, permease protein	no	0.23
9	PP_3770		conserved protein of unknown function	no	0.23
10	PP_2641		Iron-sulfur cluster-binding protein	no	0.22
11	PP_1022		glucose 6-phosphate-1-dehydrogenase	no	0.22
12	PP_4542		putative ABC transporter, ATP-binding protein/permease protein	no	0.22
13	PP_0670		Transporter, bile acid/Na+ symporter family	no	0.22
14	PP_3614		conserved membrane protein of unknown function	0.40	0.22
15	PP_3342		nickel ABC transporter periplasmic binding protein	no	0.22
16	PP_2638		putative Cellulose synthase operon C protein	no	0.22
17	PP_2782		Pyridoxalphosphate dependent aminotransferase, class III	no	0.21
18	PP_2770		conserved exported protein of unknown function	0.14	0.21
19	PP_1450		putative Activation/secretion protein, TPS family	no	0.21
20	PP_5272		conserved protein of unknown function	no	0.20

Or look for negative cofitness