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  • Top cofit genes for PP_3213 from Pseudomonas putida KT2440

    ABC transporter, periplasmic binding component-related protein
    SEED: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
    KEGG: sulfonate/nitrate/taurine transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1468 Tyrosine recombinase XerD no 0.18
    2 PP_1581 BNR domain protein no 0.17
    3 PP_4693 RNA polymerase-binding transcription factor DksA no 0.16
    4 PP_0831 hypothetical protein no 0.16
    5 PP_0938 conserved protein of unknown function no 0.16
    6 PP_4943 putative Glycosyl transferase no 0.15
    7 PP_0012 DNA replication and repair protein 0.34 0.15
    8 PP_3681 putative Helicase no 0.15
    9 PP_1217 Holliday junction ATP-dependent DNA helicase RuvB no 0.14
    10 PP_1187 sensor protein no 0.14
    11 PP_3066 Pyocin R2_PP, lytic enzyme no 0.14
    12 PP_5449 conserved exported protein of unknown function no 0.13
    13 PP_4799 putative Muramoyltetrapeptide carboxypeptidase no 0.13
    14 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA no 0.13
    15 PP_0856 conserved lipoprotein of unknown function 0.33 0.13
    16 PP_5421 conserved protein of unknown function no 0.13
    17 PP_2710 conserved protein of unknown function no 0.13
    18 PP_0007 conserved hypothetical protein 0.29 0.13
    19 PP_1699 2-pyrone-4,6-dicarboxylic acid hydrolase no 0.13
    20 PP_0683 conserved protein of unknown function no 0.13

    Or look for negative cofitness