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  • Top cofit genes for PP_3177 from Pseudomonas putida KT2440

    conserved protein of unknown function
    SEED: Sugar diacid utilization regulator SdaR
    KEGG: carbohydrate diacid regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_5604 putative subtilisin-like serine protease 0.24 0.18
    2 PP_3992 xanthine permease 0.65 0.18
    3 PP_3496 Endoribonuclease L-PSP no 0.17
    4 PP_2026 conserved protein of unknown function no 0.17
    5 PP_3785 conserved protein of unknown function no 0.17
    6 PP_5497 conserved protein of unknown function with rhs repeat-associated core domain no 0.16
    7 PP_3022 Transcriptional regulator, AraC family no 0.16
    8 PP_3602 2,5-dioxovalerate dehydrogenase no 0.16
    9 PP_0818 conserved protein of unknown function no 0.16
    10 PP_3249 putative oxidoreductase no 0.16
    11 PP_3732 Enoyl-CoA hydratase/isomerase family protein 0.12 0.16
    12 PP_0062 3-methyl-adenine DNA glycosylase I 0.15 0.16
    13 PP_2193 Outer membrane ferric siderophore receptor no 0.16
    14 PP_2785 conserved exported protein of unknown function no 0.15
    15 PP_0892 Phospholipase family protein no 0.15
    16 PP_0573 conserved protein of unknown function 0.60 0.15
    17 PP_3338 putative cytochrome bd-type quinol oxidase no 0.15
    18 PP_1893 medium-long chain acyl-CoA dehydrogenase 0.31 0.15
    19 PP_1269 Universal stress protein family no 0.15
    20 PP_2650 putative 4-hydroxybutyrate dehydrogenase no 0.15

    Or look for negative cofitness