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  • Top cofit genes for PP_3161 from Pseudomonas putida KT2440

    benzoate 1,2-dioxygenase subunit alpha
    SEED: Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10)
    KEGG: benzoate 1,2-dioxygenase alpha subunit

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3716 HTH-type transcriptional regulator 0.53 0.62
    2 PP_3714 Muconolactone Delta-isomerase 0.71 0.61
    3 PP_3163 benzoate 1,2-dioxygenase electron transfer component 0.83 0.52
    4 PP_3164 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase 0.70 0.52
    5 PP_3159 BenABC operon transcriptional activator 0.86 0.50
    6 PP_3715 Muconate cycloisomerase 1 0.47 0.45
    7 PP_3162 benzoate 1,2-dioxygenase subunit beta 0.75 0.34
    8 PP_1375 transcription regulatory protein (pca regulon) 0.61 0.29
    9 PP_1378 alpha-ketoglutarate permease 0.19 0.27
    10 PP_1380 3-oxoadipate enol-lactonase 2 0.70 0.25
    11 PP_3952 3-oxoadipate CoA-transferase subunit A no 0.24
    12 PP_1377 beta-ketoadipyl-CoA thiolase 0.38 0.24
    13 PP_3713 Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data) 0.67 0.23
    14 PP_3951 3-oxoadipate CoA-transferase subunit A no 0.22
    15 PP_3493 Transcriptional regulator, LysR family no 0.21
    16 PP_0997 Sigma-54 dependent transcriptional regulator/sensory box protein 0.21 0.17
    17 PP_2356 putative Phytochrome family protein no 0.16
    18 PP_1426 L-aspartate oxidase 0.52 0.15
    19 PP_0988 glycine dehydrogenase 0.21 0.15
    20 PP_2354 Sensory box histidine kinase/response regulator no 0.15

    Or look for negative cofitness