Top cofit genes for PP_3121 from Pseudomonas putida KT2440

transcriptional regulator, LysR family
SEED: LysR family transcriptional regulator near succinyl-CoA:3-ketoacid-coenzyme A transferase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_3123		acetoacetyl CoA-transferase (subunit B)	0.66	0.75
2	PP_3122		acetoacetyl CoA-transferase (subunit A)	0.68	0.69
3	PP_4116		isocitrate lyase	0.53	0.33
4	PP_4064		isovaleryl-CoA dehydrogenase	0.27	0.32
5	PP_4067		methylcrotonyl-CoA carboxylase biotin-containing subunit alpha	no	0.31
6	PP_4065		methylcrotonyl-CoA carboxylase biotin-containing subunit beta	0.16	0.30
7	PP_0356		malate synthase G	0.57	0.30
8	PP_4063		putative Long-chain-fatty-acid-CoA ligase	no	0.29
9	PP_3073		3-hydroxybutyrate dehydrogenase	0.33	0.29
10	PP_5659		protein of unknown function	no	0.28
11	PP_3075		putative transcriptional regulator	no	0.27
12	PP_3754		Beta-ketothiolase BktB	no	0.27
13	PP_4066		methylglutaconyl-CoA hydratase	no	0.26
14	PP_3074		D-beta-hydroxybutyrate permease	no	0.25
15	PP_3753		Transcriptional regulator, AraC family	no	0.25
16	PP_2791		4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data)	no	0.25
17	PP_3433		4-hydroxyphenylpyruvate dioxygenase	0.15	0.24
18	PP_4621		Homogentisate 1,2-dioxygenase	no	0.22
19	PP_4489		sigma-54 dependent transcriptional regulator	0.18	0.22
20	PP_4699		3-methyl-2-oxobutanoate hydroxymethyltransferase	0.28	0.21

Or look for negative cofitness