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  • Top cofit genes for PP_3093 from Pseudomonas putida KT2440

    conserved protein of unknown function
    SEED: Uncharacterized protein ImpJ/VasE
    KEGG: type VI secretion system protein ImpJ

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3090 OmpA domain protein no 0.21
    2 PP_t29 tRNA-Ala no 0.20
    3 PP_0195 conserved protein of unknown function no 0.19
    4 PP_2764 FMN reductase (NADPH) no 0.19
    5 PP_2325 2-dehydropantoate 2-reductase no 0.18
    6 PP_5194 aminomethyltransferase 0.44 0.18
    7 PP_1392 putative NAD-binding protein no 0.18
    8 PP_3764 outer-membrane porin D no 0.18
    9 PP_4542 putative ABC transporter, ATP-binding protein/permease protein no 0.17
    10 PP_3721 arginine:pyruvate transaminase AruH (EC 2.6.1.84) (from data) no 0.17
    11 PP_1657 modified nucleoside triphosphate pyrophosphohydrolase no 0.17
    12 PP_4902 Oligoribonuclease no 0.17
    13 PP_4204 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor no 0.17
    14 PP_1882 conserved membrane protein of unknown function 0.35 0.16
    15 PP_2911 gamma-aminobutyrate permease no 0.16
    16 PP_3260 DNA ligase D no 0.16
    17 PP_0706 fused O(6)-alkylguanine DNA alkyltransferase - transcriptional activator 0.42 0.16
    18 PP_3968 Sensor histidine kinase no 0.16
    19 PP_3632 Transcriptional regulator, LysR family no 0.16
    20 PP_0208 putative Nitrate ABC transporter, permease protein no 0.16

    Or look for negative cofitness