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  • Top cofit genes for PP_3090 from Pseudomonas putida KT2440

    OmpA domain protein
    SEED: OmpA domain protein
    KEGG: type VI secretion system protein ImpL

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1906 ribosomal large subunit pseudouridine synthase C no 0.21
    2 PP_3093 conserved protein of unknown function no 0.21
    3 PP_3087 putative excinuclease ABC subunit A no 0.20
    4 PP_5145 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) no 0.20
    5 PP_4263 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein no 0.20
    6 PP_3256 Glycosyl transferase, group 2 family protein no 0.19
    7 PP_0949 putative ATP-binding protein UPF0042 no 0.19
    8 PP_4902 Oligoribonuclease no 0.18
    9 PP_3097 conserved protein of unknown function no 0.18
    10 PP_0822 tRNA 2-selenouridine synthase no 0.18
    11 PP_0571 conserved membrane protein of unknown function no 0.18
    12 PP_3091 conserved membrane protein of unknown function no 0.18
    13 PP_4726 Chaperone protein DnaJ no 0.18
    14 PP_1484 predicted polyamine ABC transporter, ATP-binding protein no 0.17
    15 PP_3633 putative ArgC like N-acetyl-gamma-glutamyl-phosphate reductase no 0.17
    16 PP_2008 2,4-dienoyl-CoA reductase no 0.17
    17 PP_5084 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase no 0.17
    18 PP_4167 Phosphohistidine phosphatase SixA no 0.17
    19 PP_4126 NADH-quinone oxidoreductase subunit I no 0.16
    20 PP_3209 Isoxanthopterin deaminase no 0.16

    Or look for negative cofitness