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  • Top cofit genes for PP_3086 from Pseudomonas putida KT2440

    putative RNA polymerase sigma-70 factor
    SEED: RNA polymerase sigma-70 factor, putative
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3346 Nickel transporter ATP-binding protein no 0.16
    2 PP_2600 conserved protein of unknown function no 0.16
    3 PP_1853 Transcriptional regulator, LysR family no 0.15
    4 PP_1273 putative Multidrug efflux MFS outer membrane protein no 0.15
    5 PP_1700 Acyltransferase no 0.15
    6 PP_2428 Probable sugar efflux transporter no 0.15
    7 PP_3727 Amino-acid permease RocE no 0.15
    8 PP_5480 conserved exported protein of unknown function no 0.15
    9 PP_4768 Exonuclease no 0.15
    10 PP_3335 conserved protein of unknown function no 0.15
    11 PP_0259 purine nucleotidase no 0.14
    12 PP_2713 DNA-binding response regulator no 0.14
    13 PP_2043 conserved exported protein of unknown function no 0.14
    14 PP_1975 putative EmrB/QacA family drug resistance transporter no 0.14
    15 PP_0759 conserved exported protein of unknown function no 0.14
    16 PP_2416 putative Iron ABC transporter, ATP-binding protein no 0.14
    17 PP_4600 molybdenum cofactor biosynthesis protein B no 0.14
    18 PP_3536 conserved protein of unknown function no 0.14
    19 PP_1483 polyamine ABC transporter, permease protein no 0.14
    20 PP_4497 conserved protein of unknown function no 0.14

    Or look for negative cofitness