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  • Top cofit genes for PP_3075 from Pseudomonas putida KT2440

    putative transcriptional regulator
    SEED: sigma-54 dependent transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3123 acetoacetyl CoA-transferase (subunit B) 0.34 0.36
    2 PP_3073 3-hydroxybutyrate dehydrogenase 0.73 0.35
    3 PP_3074 D-beta-hydroxybutyrate permease 0.68 0.32
    4 PP_3121 transcriptional regulator, LysR family no 0.27
    5 PP_3122 acetoacetyl CoA-transferase (subunit A) 0.38 0.27
    6 PP_4116 isocitrate lyase 0.30 0.24
    7 PP_3076 putative ABC transporter permease protein 0.70 0.23
    8 PP_0356 malate synthase G 0.36 0.21
    9 PP_5659 protein of unknown function no 0.20
    10 PP_3603 Transcriptional regulator, GntR family no 0.20
    11 PP_0057 major facilitator family transporter 0.27 0.18
    12 PP_4130 NADH:ubiquinone oxidoreductase, membrane subunit M no 0.17
    13 PP_2049 Alcohol dehydrogenase, iron-containing no 0.17
    14 PP_1826 Hydrolase, isochorismatase family 0.51 0.17
    15 PP_4131 NADH-quinone oxidoreductase subunit N no 0.16
    16 PP_1517 RND efflux transporter no 0.16
    17 PP_3866 conserved protein of unknown function 0.20 0.15
    18 PP_0236 NAD(P)H-dependent FMN reductase subunit no 0.15
    19 PP_4704 conserved protein of unknown function no 0.15
    20 PP_2084 Putative regulator of ribonuclease activity 0.63 0.15

    Or look for negative cofitness