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  • Top cofit genes for PP_3062 from Pseudomonas putida KT2440

    putative Pyocin R2_PP, tail length determination protein
    SEED: Phage tail length tape-measure protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_2567 Hydrolase, alpha/beta fold family no 0.24
    2 PP_4118 putative Membrane protein no 0.23
    3 PP_1253 Transcriptional regulator, ArsR family no 0.22
    4 PP_2293 DNA maturase B no 0.22
    5 PP_0619 Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein no 0.22
    6 PP_1532 putative Phage integrase no 0.21
    7 PP_4946 sodium/L-proline transporter no 0.20
    8 PP_2971 transposase no 0.20
    9 PP_0137 glutamate/aspartate-proton DAACS transporter no 0.19
    10 PP_2801 gamma-aminobutyraldehyde dehydrogenase no 0.19
    11 PP_0143 conserved membrane protein of unknown function no 0.19
    12 PP_4937 toluene tolerance protein no 0.19
    13 PP_2379 putative cytochrome oxidase biogenesis protein no 0.19
    14 PP_4944 Carbamoyltransferase no 0.19
    15 PP_1325 putative lipoprotein no 0.19
    16 PP_0971 conserved protein of unknown function no 0.19
    17 PP_3907 conserved protein of unknown function no 0.19
    18 PP_1201 conserved exported protein of unknown function no 0.19
    19 PP_0704 RNA polymerase sigma-70 factor, ECF subfamily no 0.18
    20 PP_3869 putative Phage sheath protein no 0.18

    Or look for negative cofitness