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  • Top cofit genes for PP_3016 from Pseudomonas putida KT2440

    putative Lipopolysaccharide core biosynthesis protein
    SEED: Lipopolysaccharide core biosynthesis protein RfaZ
    KEGG: KDO transferase III

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1626 DNA mismatch repair protein MutS no 0.21
    2 PP_0924 conserved protein of unknown function no 0.19
    3 PP_1072 Leucine-rich repeat domain protein no 0.18
    4 PP_0099 conserved protein of unknown function no 0.18
    5 PP_4470 putative transcriptional regulator (Arc domain-containing) no 0.18
    6 PP_2248 putative transporter no 0.18
    7 PP_3108 Rhs-related protein no 0.18
    8 PP_2171 Transporter, LysE family no 0.17
    9 PP_4515 Transcriptional regulator, MarR family 0.77 0.17
    10 PP_0740 Transcriptional regulator, MerR family no 0.17
    11 PP_3518 conserved exported protein of unknown function no 0.16
    12 PP_3226 Acyl-CoA dehydrogenase-related protein no 0.16
    13 PP_0703 putative Transmembrane sensor no 0.16
    14 PP_5113 predicted Zn-dependent peptidases no 0.16
    15 PP_2048 putative acyl-CoA dehydrogenase no 0.16
    16 PP_1029 conserved membrane protein of unknown function no 0.16
    17 PP_0128 conserved protein of unknown function no 0.16
    18 PP_2974 putative sulfatase no 0.16
    19 PP_4176 putative 5-oxo-L-prolinase no 0.16
    20 PP_0054 conserved membrane protein of unknown function no 0.16

    Or look for negative cofitness