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  • Top cofit genes for PP_2952 from Pseudomonas putida KT2440

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0881 dipeptide ABC transporter - putative membrane subunit 0.45 0.27
    2 PP_1231 quinolinate synthase [4Fe-4S] cluster subunit no 0.26
    3 PP_0291 conserved protein of unknown function no 0.24
    4 PP_1079 Ornithine carbamoyltransferase 0.27 0.24
    5 PP_2327 transcriptional dual regulator / CysB-O-acetyl-L-serine no 0.24
    6 PP_4696 Nitrogen regulation protein NR(I) no 0.24
    7 PP_3789 putative Efflux transporter no 0.24
    8 PP_2986 putative Oxidoreductase no 0.23
    9 PP_5227 diaminopimelate decarboxylase 0.32 0.23
    10 PP_0787 quinolinate phosphoribosyltransferase (decarboxylating) monomer no 0.23
    11 PP_4695 Sensory box histidine kinase no 0.22
    12 PP_5097 homoserine O-acetyltransferase 0.28 0.22
    13 PP_4678 Ketol-acid reductoisomerase 0.31 0.21
    14 PP_3511 Branched-chain-amino-acid aminotransferase no 0.21
    15 PP_4680 acetohydroxybutanoate synthase / acetolactate synthase no 0.21
    16 PP_1426 L-aspartate oxidase no 0.21
    17 PP_5015 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) no 0.21
    18 PP_0967 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) 0.30 0.21
    19 PP_2001 O-succinylhomoserine sulfhydrylase 0.27 0.21
    20 PP_0966 Histidinol dehydrogenase 0.29 0.21

    Or look for negative cofitness