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  • Top cofit genes for PP_2841 from Pseudomonas putida KT2440

    Site-specific recombinase, phage integrase family
    SEED: Site-specific recombinase, phage integrase family

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_2556 Chromate transporter no 0.22
    2 PP_0352 RNA polymerase sigma-70 factor, ECF subfamily no 0.20
    3 PP_4559 peptide deformylase no 0.19
    4 PP_2210 LysR family transcriptional regulator no 0.19
    5 PP_0888 Photosynthetic apparatus regulatory protein RegA no 0.18
    6 PP_1445 carbohydrate-selective porin no 0.18
    7 PP_2832 galactose-binding protein regulator no 0.17
    8 PP_2870 putative spermidine/putrescine-binding periplasmic protein no 0.17
    9 PP_0216 putative sensory box/GGDEF family protein no 0.17
    10 PP_1824 Smr domain protein no 0.17
    11 PP_3719 Putrescine-binding periplasmic protein no 0.17
    12 PP_4533 mechanosensitive channel of miniconductance no 0.17
    13 PP_1821 Glutathione S-transferase family protein 0.22 0.17
    14 PP_5157 conserved exported protein of unknown function 0.31 0.17
    15 PP_5651 conserved protein of unknown function no 0.17
    16 PP_4162 conserved membrane protein of unknown function no 0.17
    17 PP_1008 RNA polymerase subunit sigma-24 no 0.16
    18 PP_2363 conserved protein of unknown function no 0.16
    19 PP_1707 D-isomer specific 2-hydroxyacid dehydrogenase family protein 0.48 0.16
    20 PP_2212 Leucine-rich repeat domain protein no 0.16

    Or look for negative cofitness