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  • Top cofit genes for PP_2818 from Pseudomonas putida KT2440

    Multidrug efflux RND transporter MexD
    SEED: Multidrug efflux RND transporter MexD
    KEGG: hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3925 conserved protein of unknown function no 0.47
    2 PP_2436 Transcriptional regulator, LysR family 0.22 0.45
    3 PP_2817 Multidrug efflux RND membrane fusion protein MexC 0.89 0.34
    4 PP_0767 Transcriptional regulator, LuxR family no 0.33
    5 PP_4948 Acyl-CoA dehydrogenase family protein no 0.30
    6 PP_4817 MaoC domain protein no 0.29
    7 PP_1941 conserved protein of unknown function no 0.28
    8 PP_5203 5-formyltetrahydrofolate cyclo-ligase no 0.26
    9 PP_2019 adhesin-associated MmpL efflux pump (from data) no 0.25
    10 PP_0138 conserved membrane protein of unknown function no 0.25
    11 PP_1385 Probable efflux pump membrane transporter TtgB 0.20 0.25
    12 PP_1386 Probable efflux pump periplasmic linker TtgA no 0.25
    13 PP_2375 cobalamin-dependent methionine synthase no 0.24
    14 PP_4977 5,10-methylenetetrahydrofolate reductase 0.32 0.24
    15 PP_2752 conserved exported protein of unknown function no 0.24
    16 PP_0570 lipoprotein of unknown function no 0.22
    17 PP_4785 conserved exported protein of unknown function 0.34 0.22
    18 PP_0763 Medium-chain-fatty-acid CoA ligase no 0.22
    19 PP_2168 Transaldolase no 0.22
    20 PP_0370 Acyl-CoA dehydrogenase family protein no 0.22

    Or look for negative cofitness