Top cofit genes for PP_2725 from Pseudomonas putida KT2440

Protease PfpI
SEED: ThiJ/PfpI family protein
KEGG: protease I

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_1881		conserved protein of unknown function	no	0.21
2	PP_0610		conserved exported protein of unknown function	0.37	0.20
3	PP_4053		maltooligosyl trehalose synthase	no	0.19
4	PP_2392		putative major facilitator family transporter	no	0.18
5	PP_0803		Protein secretion ABC efflux system, membrane fusion protein	no	0.16
6	PP_5693		conserved protein of unknown function	no	0.16
7	PP_2864		conserved protein of unknown function	0.42	0.16
8	PP_2764		FMN reductase (NADPH)	no	0.15
9	PP_4470		putative transcriptional regulator (Arc domain-containing)	no	0.15
10	PP_0804		Protein secretion ABC efflux system, permease and ATP-binding protein	no	0.15
11	PP_5081		Type IV pili biogenesis protein	no	0.15
12	PP_3630		tyrosine-specific outer membrane porin D	no	0.15
13	PP_1492		Sensor histidine kinase/response regulator	0.22	0.15
14	PP_0630		DNA gyrase inhibitor YacG	no	0.15
15	PP_2220		C4-type zinc finger protein, DksA/TraR family	no	0.14
16	PP_4905		Flagellar motor rotation protein	no	0.14
17	PP_3093		conserved protein of unknown function	no	0.14
18	PP_3343		nickel ABC transporter permease subunit	no	0.14
19	PP_3174		putative Oxidoreductase	no	0.14
20	PP_4893		GTPase HflX	no	0.14

Or look for negative cofitness