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  • Top cofit genes for PP_2558 from Pseudomonas putida KT2440

    putative Outer membrane efflux protein
    SEED: ABC-type protease exporter, outer membrane component PrtF/AprF
    KEGG: outer membrane protein HasF

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1063 DNA-binding transcriptional regulator, homocysteine-binding no 0.27
    2 PP_2348 Sensor histidine kinase no 0.22
    3 PP_3790 diaminopimelate epimerase no 0.22
    4 PP_3376 putative phosphonate dehydrogenase no 0.22
    5 PP_2714 Sensor histidine kinase no 0.21
    6 PP_3788 putative Non-ribosomal peptide synthetase no 0.20
    7 PP_3244 Magnesium transporter, MgtC family no 0.19
    8 PP_3786 aminotransferase no 0.19
    9 PP_0506 putative ABC efflux transporter, permease protein no 0.19
    10 PP_1644 NAD(P)H dehydrogenase (quinone) no 0.19
    11 PP_4221 non-ribosomal peptide synthetase (subunit of ferribactin synthase) no 0.18
    12 PP_1566 Peptidase U35 no 0.18
    13 PP_3740 Major facilitator family transporter no 0.18
    14 PP_4684 conserved protein of unknown function with kinase-like domain no 0.18
    15 PP_1253 Transcriptional regulator, ArsR family no 0.18
    16 PP_2637 endo-1,4-D-glucanase subunit of cellulose synthase no 0.17
    17 PP_1109 Transcriptional regulator, GntR family no 0.17
    18 PP_4371 two component system AtoC DNA-binding transcriptional activator 0.45 0.17
    19 PP_1348 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase no 0.17
    20 PP_3000 MaoC domain protein no 0.17

    Or look for negative cofitness