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  • Top cofit genes for PP_2554 from Pseudomonas putida KT2440

    putative 3-dehydroshikimate dehydratase
    SEED: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
    KEGG: 4-hydroxyphenylpyruvate dioxygenase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_2553 Major facilitator family transporter 0.32 0.44
    2 PP_2406 putative quinate/shikimate dehydrogenase 0.89 0.28
    3 PP_1378 alpha-ketoglutarate permease 0.47 0.20
    4 PP_0246 two-component system DNA-binding response transcriptional dual regulator no 0.17
    5 PP_4789 heat shock protein, Co2+ and Mg2+ efflux protein no 0.17
    6 PP_1713 Transcriptional regulator PcaQ 0.52 0.17
    7 PP_1377 beta-ketoadipyl-CoA thiolase 0.49 0.16
    8 PP_5322 putative metal ion transporter 0.20 0.16
    9 PP_1380 3-oxoadipate enol-lactonase 2 0.54 0.16
    10 PP_2365 Transcriptional regulator, AraC family no 0.16
    11 PP_3608 Transcriptional regulator, LysR family no 0.15
    12 PP_0796 conserved protein of unknown function no 0.15
    13 PP_2604 major facilitator family transporter 0.92 0.15
    14 PP_1379 3-carboxy-cis,cis-muconate cycloisomerase 0.58 0.14
    15 PP_1110 serine acetyltransferase no 0.14
    16 PP_t57 tRNA-Arg no 0.14
    17 PP_3952 3-oxoadipate CoA-transferase subunit A 0.59 0.14
    18 PP_4656 protocatechuate 3,4-dioxygenase beta chain 0.59 0.14
    19 PP_0927 aromatic amino acid transport protein no 0.14
    20 PP_3814 Polyamine ABC transporter, periplasmic polyamine-binding protein no 0.13

    Or look for negative cofitness