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  • Top cofit genes for PP_2542 from Pseudomonas putida KT2440

    Transcriptional regulator, GntR family
    SEED: Transcriptional regulator GabR of GABA utilization (GntR family with aminotransferase-like domain)

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0127 Thiol:disulfide interchange protein no 0.22
    2 PP_0809 disulfide bond formation protein B no 0.21
    3 PP_2749 putative Branched-chain amino acid ABC transporter, permease protein no 0.21
    4 PP_0281 Amino acid ABC transporter, permease protein no 0.21
    5 PP_1271 putative Multidrug efflux MFS transporter no 0.19
    6 PP_0970 Cyanate MFS transporter no 0.18
    7 PP_2794 Oxidoreductase, short chain dehydrogenase/reductase family no 0.18
    8 PP_2543 gamma-aminobutyrate permease no 0.18
    9 PP_0282 L-arginine ABC transporter - periplasmic binding subunit no 0.18
    10 PP_2689 putative Endoribonuclease no 0.17
    11 PP_4162 conserved membrane protein of unknown function 0.54 0.17
    12 PP_2907 DNA-binding response regulator no 0.17
    13 PP_4057 conserved membrane protein of unknown function with autotransporter beta-domain no 0.17
    14 PP_4286 allantoinase no 0.17
    15 PP_3451 conserved exported protein of unknown function no 0.16
    16 PP_0489 formate dehydrogenase-O major subunit no 0.16
    17 PP_3960 Transcriptional regulator, TetR family no 0.16
    18 PP_4475 succinylglutamate desuccinylase no 0.16
    19 PP_0354 CBS domain protein 0.40 0.16
    20 PP_3173 N-ethylmaleimide reductase, FMN-linked no 0.16

    Or look for negative cofitness