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  • Top cofit genes for PP_2518 from Pseudomonas putida KT2440

    gallate dioxygenase
    SEED: Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8)
    KEGG: protocatechuate 4,5-dioxygenase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0094 5'-nucleotidase no 0.22
    2 PP_1623 RNA polymerase, sigma S (sigma 38) factor no 0.20
    3 PP_3073 3-hydroxybutyrate dehydrogenase no 0.20
    4 PP_5502 ribosome modulation factor no 0.20
    5 PP_5121 conserved exported protein of unknown function no 0.20
    6 PP_2971 transposase no 0.20
    7 PP_4008 ATP-dependent serine protease no 0.20
    8 PP_4162 conserved membrane protein of unknown function no 0.19
    9 PP_2437 putative Acyl-CoA dehydrogenase no 0.19
    10 PP_4215 pyoverdine biosynthesis related protein no 0.19
    11 PP_3910 conserved protein of unknown function no 0.19
    12 PP_3668 Catalase-peroxidase no 0.19
    13 PP_1319 Ubiquinol--cytochrome c reductase, cytochrome c1 no 0.18
    14 PP_3556 conserved membrane protein of unknown function no 0.18
    15 PP_4253 cytochrome c oxidase subunit, cbb3-type no 0.18
    16 PP_1867 conserved protein of unknown function no 0.18
    17 PP_2077 diaminopimelate decarboxylase no 0.18
    18 PP_4375 flagellar chaperone, inhibits premature FliC assembly no 0.18
    19 PP_1206 basic-amino-acid specific porin OprD no 0.18
    20 PP_0850 Dual-specificity RNA methyltransferase RlmN no 0.17

    Or look for negative cofitness