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  • Top cofit genes for PP_2455 from Pseudomonas putida KT2440

    ribose ABC transporter - ATP-binding subunit
    SEED: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
    KEGG: ribose transport system ATP-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_2457 DNA-binding transcriptional repressor 0.65 0.33
    2 PP_2456 D-ribose ABC transporter - permease subunit 0.95 0.31
    3 PP_2458 ribokinase 0.86 0.28
    4 PP_1022 glucose 6-phosphate-1-dehydrogenase 0.28 0.25
    5 PP_2210 LysR family transcriptional regulator 0.36 0.24
    6 PP_4988 signal transduction histidine kinase CheA/CheY-like receiver no 0.24
    7 PP_2081 putative phosphoenolpyruvate synthase regulatory protein no 0.24
    8 PP_1571 conserved protein of unknown function no 0.24
    9 PP_1362 pyruvate kinase II 0.60 0.24
    10 PP_4676 methionine sulfoxide reductase catalytic subunit 0.74 0.23
    11 PP_5350 Transcriptional regulator, RpiR family no 0.23
    12 PP_4964 D-erythrose 4-phosphate dehydrogenase 0.53 0.23
    13 PP_4804 RlpA-like lipoprotein no 0.23
    14 PP_3852 conserved protein of unknown function with BNR domain no 0.23
    15 PP_4507 potassium transporter no 0.23
    16 PP_2454 ribose ABC transporter, periplasmic ribose-binding subunit 0.92 0.23
    17 PP_0830 Acetyltransferase, GNAT family no 0.23
    18 PP_0650 conserved protein of unknown function no 0.22
    19 PP_4925 conserved protein of unknown function no 0.22
    20 PP_3019 Carbon-nitrogen hydrolase family protein no 0.22

    Or look for negative cofitness