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  • Top cofit genes for PP_2437 from Pseudomonas putida KT2440

    putative Acyl-CoA dehydrogenase
    SEED: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4)
    KEGG: acyl-CoA dehydrogenase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_0951 Ribosome hibernation promoting factor 0.63 0.38
    2 PP_5502 ribosome modulation factor no 0.36
    3 PP_4143 conserved protein of unknown function 0.68 0.36
    4 PP_5145 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) 0.38 0.34
    5 PP_1623 RNA polymerase, sigma S (sigma 38) factor 0.43 0.33
    6 PP_2889 putative Transmembrane regulator PrtR 0.89 0.33
    7 PP_4726 Chaperone protein DnaJ no 0.32
    8 PP_0397 protein kinase 0.62 0.32
    9 PP_2862 Undecaprenyl-diphosphatase no 0.31
    10 PP_0395 putative type IV piliation protein 0.61 0.31
    11 PP_0760 conserved membrane protein of unknown function 0.55 0.31
    12 PP_0396 conserved protein of unknown function 0.59 0.30
    13 PP_0872 Peptide chain release factor 3 0.36 0.30
    14 PP_4766 ATP-dependent RNA helicase no 0.30
    15 PP_5006 Transcriptional regulator, TetR family no 0.29
    16 PP_5146 RNA pyrophosphohydrolase 0.49 0.29
    17 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.35 0.29
    18 PP_4820 tRNA-dihydrouridine synthase B 0.42 0.29
    19 PP_5053 Protein-export protein SecB 0.46 0.28
    20 PP_5005 Poly(3-hydroxyalkanoate) polymerase 2 no 0.28

    Or look for negative cofitness