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  • Top cofit genes for PP_2424 from Pseudomonas putida KT2440

    putative 2'-5' RNA ligase
    SEED: 2'-5' RNA ligase
    KEGG: 2'-5' RNA ligase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_5144 conserved protein of unknown function no 0.19
    2 PP_1246 conserved exported protein of unknown function no 0.18
    3 PP_4405 Sensory box protein no 0.17
    4 PP_4841 putative Urea ABC transporter, periplasmic protein no 0.17
    5 PP_2248 putative transporter no 0.16
    6 PP_3256 Glycosyl transferase, group 2 family protein no 0.16
    7 PP_2418 putative cobalamin ABC transporter, periplasmic no 0.16
    8 PP_0331 conserved protein of unknown function no 0.16
    9 PP_2750 putative Branched-chain amino acid ABC transporter, permease protein no 0.16
    10 PP_5478 conserved protein of unknown function no 0.16
    11 PP_1656 ATP:GTP 3'-pyrophosphotransferase no 0.16
    12 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD no 0.16
    13 PP_3477 Putative secretion type II protein related to protein G no 0.15
    14 PP_0026 putative cobalt/cadmium/zinc exporter no 0.15
    15 PP_3732 Enoyl-CoA hydratase/isomerase family protein no 0.15
    16 PP_1454 conserved protein of unknown function no 0.14
    17 PP_2790 Sigma-54 dependent sensory box protein no 0.14
    18 PP_4540 Hydrolase, alpha/beta fold family no 0.14
    19 PP_3276 ring 1,2-phenylacetyl-CoA epoxidase beta subunit no 0.14
    20 PP_2593 Ferric siderophore ABC transporter, permease protein no 0.14

    Or look for negative cofitness