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  • Top cofit genes for PP_2418 from Pseudomonas putida KT2440

    putative cobalamin ABC transporter, periplasmic
    SEED: Cobalt ABC transporter, periplasmic substrate-binding component CbtJ
    KEGG: iron complex transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4497 conserved protein of unknown function no 0.25
    2 PP_1301 quality control serine endoprotease DegS no 0.24
    3 PP_3997 putative Glycosyl transferase no 0.24
    4 PP_1235 AhpC/TSA family protein 0.53 0.24
    5 PP_5284 UPF0758 protein PP_5284 no 0.23
    6 PP_4515 Transcriptional regulator, MarR family no 0.23
    7 PP_4498 Segregation and condensation protein A no 0.23
    8 PP_3627 conserved protein of unknown function no 0.23
    9 PP_4495 aromatic amino acid transport protein no 0.22
    10 PP_0540 conserved inner membrane protein no 0.22
    11 PP_1627 conserved protein of unknown function no 0.22
    12 PP_2750 putative Branched-chain amino acid ABC transporter, permease protein no 0.21
    13 PP_4405 Sensory box protein no 0.20
    14 PP_2591 Ferric anguibactin-binding protein no 0.20
    15 PP_2078 transcriptional activator protein LysR 0.58 0.20
    16 PP_0066 Ribosomal RNA small subunit methyltransferase B no 0.20
    17 PP_2364 conserved protein of unknown function no 0.20
    18 PP_4658 putative methyl-accepting chemotaxis protein 0.38 0.20
    19 PP_1853 Transcriptional regulator, LysR family no 0.20
    20 PP_1072 Leucine-rich repeat domain protein no 0.20

    Or look for negative cofitness