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  • Top cofit genes for PP_2406 from Pseudomonas putida KT2440

    putative quinate/shikimate dehydrogenase
    SEED: Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25)
    KEGG: shikimate dehydrogenase

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_2554 putative 3-dehydroshikimate dehydratase 0.89 0.27
    2 PP_2553 Major facilitator family transporter 0.19 0.25
    3 PP_2060 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent 0.30 0.18
    4 PP_3219 putative Alkansulfonate monooxygenase 0.21 0.18
    5 PP_3346 Nickel transporter ATP-binding protein no 0.18
    6 PP_2393 DNA polymerase II 0.35 0.17
    7 PP_5272 conserved protein of unknown function no 0.17
    8 PP_4494 putative LysR-type transcriptional activator protein no 0.17
    9 PP_2399 conserved protein of unknown function no 0.16
    10 PP_5023 Amino acid ABC transporter, permease protein no 0.16
    11 PP_2604 major facilitator family transporter 0.93 0.16
    12 PP_3725 putative Acyl-CoA dehydrogenase no 0.16
    13 PP_2017 aminopeptidase N 0.21 0.16
    14 PP_4855 Osmotically-inducible lipoprotein OsmE 0.41 0.15
    15 PP_2026 conserved protein of unknown function no 0.15
    16 PP_0275 conserved protein of unknown function no 0.15
    17 PP_3608 Transcriptional regulator, LysR family no 0.15
    18 PP_3431 ThiJ/PfpI family protein no 0.14
    19 PP_2995 putative DNA topology modulation kinase FlaR 0.36 0.14
    20 PP_2776 Homocysteine S-methyltransferase family protein no 0.14

    Or look for negative cofitness