Top cofit genes for PP_2356 from Pseudomonas putida KT2440

putative Phytochrome family protein
SEED: Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-)

Rank	Hit	Name	Description	Conserved?	Cofitness
1	PP_2354		Sensory box histidine kinase/response regulator	0.55	0.89
2	PP_2136		enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase	0.31	0.51
3	PP_2137		beta-ketoadipyl CoA thiolase, beta component	0.33	0.46
4	PP_0356		malate synthase G	0.20	0.44
5	PP_0368		putative Acyl-CoA dehydrogenase	0.65	0.44
6	PP_1379		3-carboxy-cis,cis-muconate cycloisomerase	0.35	0.43
7	PP_1380		3-oxoadipate enol-lactonase 2	0.15	0.42
8	PP_1377		beta-ketoadipyl-CoA thiolase	no	0.42
9	PP_3951		3-oxoadipate CoA-transferase subunit A	no	0.41
10	PP_3952		3-oxoadipate CoA-transferase subunit A	no	0.41
11	PP_4655		protocatechuate 3,4-dioxygenase alpha chain	no	0.40
12	PP_1378		alpha-ketoglutarate permease	no	0.40
13	PP_4549		long-chain-fatty-acid/CoA ligase	0.78	0.40
14	PP_4656		protocatechuate 3,4-dioxygenase beta chain	no	0.39
15	PP_4116		isocitrate lyase	0.29	0.39
16	PP_1375		transcription regulatory protein (pca regulon)	no	0.38
17	PP_1941		conserved protein of unknown function	no	0.38
18	PP_1713		Transcriptional regulator PcaQ	no	0.36
19	PP_4699		3-methyl-2-oxobutanoate hydroxymethyltransferase	0.77	0.36
20	PP_0370		Acyl-CoA dehydrogenase family protein	no	0.36

Or look for negative cofitness