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  • Top cofit genes for PP_2350 from Pseudomonas putida KT2440

    LysR family transcriptional regulator
    SEED: transcriptional regulator, MerR family

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_2349 nitrite transporter, HPP family (from data) 0.23 0.33
    2 PP_3356 p-coumarate CoA-ligase (EC 6.2.1.12) (from data) no 0.18
    3 PP_0611 Type IV pili biogenesis protein PilE no 0.17
    4 PP_5146 RNA pyrophosphohydrolase no 0.17
    5 PP_1150 putative Membrane protein 0.28 0.16
    6 PP_1152 putative membrane fusion efflux protein no 0.16
    7 PP_2364 conserved protein of unknown function no 0.16
    8 PP_2355 Response regulator receiver protein no 0.16
    9 PP_4301 Pyruvate kinase no 0.16
    10 PP_2163 VacJ lipoprotein 0.50 0.15
    11 PP_2718 arsenic resistance transcriptional regulator no 0.15
    12 PP_4726 Chaperone protein DnaJ no 0.15
    13 PP_3358 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) no 0.15
    14 PP_1511 conserved protein of unknown function no 0.15
    15 PP_0960 phospholipid ABC transporter binding protein no 0.15
    16 PP_5342 Transcriptional regulator, GntR family 0.61 0.15
    17 PP_0904 InaA protein no 0.15
    18 PP_2004 Transcriptional regulator, AraC family no 0.14
    19 PP_5232 conserved protein of unknown function no 0.14
    20 PP_4570 conserved protein of unknown function 0.62 0.14

    Or look for negative cofitness