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  • Top cofit genes for PP_2247 from Pseudomonas putida KT2440

    putative Endoribonuclease
    SEED: Bona fide RidA/YjgF/TdcF/RutC subgroup

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3067 conserved protein of unknown function no 0.20
    2 PP_3803 putative Cation ABC transporter, permease protein no 0.17
    3 PP_2229 putative K(+)/H(+) antiporter subunit C 0.24 0.16
    4 PP_2968 putative nickel/cobalt transporter, high-affinity no 0.16
    5 PP_4314 conserved protein of unknown function no 0.16
    6 PP_4558 Acetyltransferase, GNAT family no 0.16
    7 PP_1903 putative phosphotyrosine-protein phosphatase no 0.16
    8 PP_3187 Cytosine transporter 0.15 0.16
    9 PP_2245 Transcriptional regulator, Cro/CI family no 0.16
    10 PP_2456 D-ribose ABC transporter - permease subunit 0.24 0.16
    11 PP_3916 conserved protein of unknown function no 0.16
    12 PP_4880 exoribonuclease R no 0.15
    13 PP_1527 tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase) no 0.15
    14 PP_4209 ABC export system, membrane fusion protein no 0.15
    15 PP_4949 putative peptidase, TldD/PmbA family no 0.15
    16 PP_3026 putative Phage recombinase no 0.15
    17 PP_4207 conserved protein of unknown function no 0.15
    18 PP_2243 conserved protein of unknown function no 0.15
    19 PP_2286 conserved protein of unknown function no 0.15
    20 PP_5676 conserved protein of unknown function no 0.14

    Or look for negative cofitness