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  • Top cofit genes for PP_2245 from Pseudomonas putida KT2440

    Transcriptional regulator, Cro/CI family
    SEED: Transcriptional regulator, Cro/CI family

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_3654 leucine-responsive regulatory protein 0.36 0.55
    2 PP_3653 Transporter, LysE family no 0.55
    3 PP_4754 Transcriptional regulator, TetR family 0.28 0.54
    4 PP_4654 tRNA/tmRNA (uracil-C(5))-methyltransferase no 0.35
    5 PP_4947 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase 0.27 0.34
    6 PP_0980 Probable cytosol aminopeptidase no 0.32
    7 PP_4729 factor used in recombination and DNA repair no 0.32
    8 PP_1872 glutamate-pyruvate aminotransferase no 0.30
    9 PP_0145 Na+/Pi-cotransporter no 0.29
    10 PP_1364 conserved exported protein of unknown function no 0.29
    11 PP_4710 tRNA pseudouridine 55 synthase no 0.27
    12 PP_0680 ATP-dependent protease-like protein no 0.27
    13 PP_4197 Transcriptional regulator, GntR family no 0.27
    14 PP_4404 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex no 0.27
    15 PP_2211 Transcriptional regulator, AraC family no 0.26
    16 PP_1234 putative permease no 0.26
    17 PP_4653 adenine:H+ symporter no 0.26
    18 PP_5183 glutamylpolyamine synthetase no 0.25
    19 PP_4615 conserved membrane protein of unknown function no 0.25
    20 PP_4911 conserved protein of unknown function no 0.23

    Or look for negative cofitness