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  • Top cofit genes for PP_2216 from Pseudomonas putida KT2440

    short-chain acyl-CoA dehydrogenase
    SEED: Butyryl-CoA dehydrogenase (EC 1.3.99.2)
    KEGG:

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_2211 Transcriptional regulator, AraC family 0.92 0.74
    2 PP_2213 putative acyl-CoA synthetase 0.91 0.73
    3 PP_2215 acetyl-CoA acetyltransferase 0.96 0.62
    4 PP_2214 3-hydroxyacyl-CoA dehydrogenase type-2 0.95 0.43
    5 PP_2217 enoyl-CoA hydratase 0.58 0.37
    6 PP_4404 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex 0.84 0.35
    7 PP_4403 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex 0.95 0.35
    8 PP_4401 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit 0.95 0.35
    9 PP_4400 Bkd operon transcriptional regulator 0.59 0.33
    10 PP_4402 branched-chain alpha-keto acid dehydrogenase complex, beta subunit 0.95 0.32
    11 PP_2334 2-methylisocitrate lyase 0.73 0.31
    12 PP_2335 methylcitrate synthase 0.92 0.31
    13 PP_3756 TetR family transcriptional regulator no 0.27
    14 PP_3653 Transporter, LysE family no 0.24
    15 PP_2333 GntR family transcriptional regulator 0.53 0.23
    16 PP_2245 Transcriptional regulator, Cro/CI family no 0.23
    17 PP_3654 leucine-responsive regulatory protein 0.17 0.22
    18 PP_3510 conserved protein of unknown function no 0.22
    19 PP_4762 Acyl-CoA thioesterase II 0.37 0.20
    20 PP_4681 conserved protein of unknown function 0.29 0.20

    Or look for negative cofitness