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  • Top cofit genes for PP_2210 from Pseudomonas putida KT2440

    LysR family transcriptional regulator
    SEED: Phosphonate uptake and metabolism regulator, LysR-family

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_1527 tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase) no 0.35
    2 PP_5157 conserved exported protein of unknown function no 0.35
    3 PP_2566 conserved protein of unknown function containing Leucine-rich repeat domain no 0.35
    4 PP_2025 Exonuclease SbcD 0.39 0.32
    5 PP_0355 Response regulator no 0.32
    6 PP_1113 Pyridoxal-phosphate dependent enzyme family protein no 0.30
    7 PP_2694 Aldehyde dehydrogenase family protein no 0.29
    8 PP_2549 conserved protein of unknown function no 0.29
    9 PP_1824 Smr domain protein no 0.29
    10 PP_t11 tRNA-Lys no 0.28
    11 PP_2419 conserved membrane protein of unknown function DUF1624 family 0.57 0.28
    12 PP_2832 galactose-binding protein regulator no 0.28
    13 PP_2933 GSH-dependent disulfide bond oxidoreductase no 0.27
    14 PP_2363 conserved protein of unknown function 0.38 0.27
    15 PP_0994 putative RNA polymerase sigma factor no 0.27
    16 PP_1504 conserved protein of unknown function 0.66 0.27
    17 PP_2573 conserved protein of unknown function no 0.27
    18 PP_5153 putative isomerase/hydrolase no 0.26
    19 PP_2889 putative Transmembrane regulator PrtR no 0.26
    20 PP_4611 RNA polymerase sigma-70 factor, ECF subfamily no 0.26

    Or look for negative cofitness