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  • Top cofit genes for PP_2181 from Pseudomonas putida KT2440

    Transcriptional regulator, Cro/CI family
    SEED: Transcriptional regulator, MerR family

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4422 succinate-semialdehyde dehydrogenase (NADP+) no 0.58
    2 PP_4398 Major facilitator family transporter no 0.41
    3 PP_2884 XRE family transcriptional regulator no 0.40
    4 PP_5268 DNA-binding transcriptional repressor PuuR-putrescine no 0.36
    5 PP_1758 putative sulfurtransferase containing rhodanese-like domain no 0.35
    6 PP_2179 glutamine amidotransferase no 0.31
    7 PP_2928 Saccharopine dehydrogenase no 0.29
    8 PP_2929 Carboxynorspermidine/carboxyspermidine decarboxylase no 0.29
    9 PP_4548 putative Oxidoreductase 0.33 0.27
    10 PP_3514 5-oxoprolinase B no 0.27
    11 PP_0567 Biosynthetic arginine decarboxylase no 0.27
    12 PP_3722 Alanine racemase no 0.25
    13 PP_3731 Transcriptional regulator, TetR family no 0.25
    14 PP_0266 Agmatine deiminase no 0.23
    15 PP_1842 Glutamine amidotransferase, class I 0.32 0.23
    16 PP_3515 5-oxoprolinase A no 0.22
    17 PP_4547 putative Glutamine synthetase no 0.22
    18 PP_2908 DNA-binding transcriptional repressor no 0.21
    19 PP_5184 glutamylpolyamine synthetase no 0.21
    20 PP_4124 NADH-quinone oxidoreductase subunit G no 0.21

    Or look for negative cofitness