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  • Top cofit genes for PP_2131 from Pseudomonas putida KT2440

    DNA-binding ATPase involved in replication
    SEED: COG0488: ATPase components of ABC transporters with duplicated ATPase domains

    Rank Hit Name Description Conserved? Cofitness  
    1 PP_4726 Chaperone protein DnaJ 0.36 0.26
    2 PP_0397 protein kinase 0.51 0.25
    3 PP_0396 conserved protein of unknown function 0.57 0.25
    4 PP_0395 putative type IV piliation protein 0.59 0.24
    5 PP_1317 Ubiquinol-cytochrome c reductase iron-sulfur subunit 0.15 0.22
    6 PP_2439 peroxiredoxin, alkylhydroperoxide reductase - small subunit 0.54 0.21
    7 PP_1906 ribosomal large subunit pseudouridine synthase C 0.80 0.20
    8 PP_1319 Ubiquinol--cytochrome c reductase, cytochrome c1 0.56 0.20
    9 PP_2561 putative secreted hemolysin-type calcium-binding bacteriocin no 0.19
    10 PP_5337 LysR family transcriptional regulator 0.51 0.19
    11 PP_3050 conserved protein of unknown function 0.21 0.19
    12 PP_0274 putative transcriptional regulator containing HTH domain no 0.19
    13 PP_3128 putative Exopolysaccharide biosynthesis/transport protein no 0.19
    14 PP_4644 DNA repair enzyme 0.61 0.19
    15 PP_3610 conserved protein of unknown function no 0.19
    16 PP_2707 putative Exodeoxyribonuclease III 0.57 0.18
    17 PP_2971 transposase no 0.18
    18 PP_2560 alkaline protease secretion transporter ATP-binding protein no 0.18
    19 PP_1623 RNA polymerase, sigma S (sigma 38) factor 0.54 0.18
    20 PP_5328 putative phosphate transport system permease protein no 0.18

    Or look for negative cofitness